Azfi_s0042.g026870 (PDF2)

Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: CDS=444-2639

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0042.g026870

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020330	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09754	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g31271	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.1Z119300.1	HDG2, Ceric.1Z119300	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
LOC_Os08g08820.2	PDF2, LOC_Os08g08820	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
LOC_Os09g35760.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Nbi_g13790	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc06g072310.3.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Solyc08g076370.3.1	HDG5, HB-7,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008289	lipid binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004527	exonuclease activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	35	90
IPR002913	START_lipid-bd_dom	235	457

External Links

No external refs found!