AMTR_s00144p00054940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00144.25

Description : Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0001265 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001265_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0001775 (SeedPlants) Phylogenetic Tree(s): OG_03_0001775_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00144p00054940
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.08 Archaeplastida
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.05 Archaeplastida
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 Archaeplastida
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Smo80491 No alias Pentatricopeptide repeat-containing protein At1g62670,... 0.03 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 Archaeplastida
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.07 LandPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 LandPlants
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 LandPlants
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 LandPlants
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants
MA_863891g0010 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.04 LandPlants
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 244 262
IPR002885 Pentatricopeptide_repeat 346 370
IPR002885 Pentatricopeptide_repeat 275 321
No external refs found!