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  5. Azfi_s0037.g025865

Azfi_s0037.g025865


Description : not classified & original description: CDS=97-4182


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0037.g025865

Target Alias Description ECC score Gene Family Method Actions
AT1G58060 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g21216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.03 OrthoFinder output from all 47 species
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Pir_g20526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Spa_g26916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1003 1068
IPR011709 DEAD-box_helicase_OB_fold 1190 1289
IPR001650 Helicase_C 869 954
IPR011545 DEAD/DEAH_box_helicase_dom 547 711
No external refs found!