Azfi_s0032.g024972 (ATRABA4C, RABA4C, SMG1)

Aliases : ATRABA4C, RABA4C, SMG1

Description : A-class RAB GTPase & original description: CDS=174-839

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0032.g024972
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT3G12160	RABA4D, ATRABA4D	RAB GTPase homolog A4D	0.03	OrthoFinder output from all 47 species
AT5G47960	ATRABA4C, RABA4C, SMG1	RAB GTPase homolog A4C	0.02	OrthoFinder output from all 47 species
Cba_g14412	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g04709	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os09g10940.1	ATRABA4C,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Ore_g06187	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02148	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g38230	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000673_P001	AtRABA4a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e009615_P001	ATRABA4C,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	74	233

External Links

No external refs found!