Solyc08g065970.3.1 (Solyc08g065970.3)


Aliases : Solyc08g065970.3

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. RNApolymerase sigma-subunit C (SIGC)


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc08g065970.3.1
Cluster HCCA cluster: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.03 Gene family
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.08 Gene family
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.05 Gene family
AT5G13730 SIGD, SIG4 sigma factor 4 0.04 Gene family
Cpa|evm.model.tig00000842.1 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.01 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01025717001 No alias No description available 0.03 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
LOC_Os11g26160 Os11g0448400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.01 Gene family
Zm00001d012810 GRMZM2G144196 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 319 384
IPR007624 RNA_pol_sigma70_r3 398 473
IPR007630 RNA_pol_sigma70_r4 486 538
No external refs found!