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  5. Azfi_s0027.g023578

Azfi_s0027.g023578 (emb1138)


Aliases : emb1138

Description : not classified & original description: CDS=239-2545


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0027.g023578
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00168720 emb1138,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.05 OrthoFinder output from all 47 species
Adi_g023797 PMH1, ATRH9 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene57148.t1 emb1138, Aspi01Gene57148 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cba_g07520 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cba_g45347 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre17.g727700 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02845 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g05028 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031360001 emb1138 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Gb_35745 emb1138 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g61220.1 emb1138, LOC_Os03g61220 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Mp3g17170.1 emb1138 RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Nbi_g03129 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g43098 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750 PRH75 not classified & original description: CDS=177-2189 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Solyc08g042050.3.1 emb1138, Solyc08g042050 RH3 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Spa_g06691 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07132 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e006243_P001 emb1138, Zm00001e006243 RH3 plastidial RNA basal splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 224 369
IPR001650 Helicase_C 415 523
No external refs found!