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  5. Azfi_s0027.g023495

Azfi_s0027.g023495


Description : DNA bending architectural protein *(HMG-B) & original description: CDS=119-1381


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0027.g023495

Target Alias Description ECC score Gene Family Method Actions
Adi_g013892 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Adi_g020072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22500 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Cba_g31905 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ceric.05G094900.1 Ceric.05G094900 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g07107 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Len_g57342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05459 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g01686 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Solyc12g094440.2.1 Solyc12g094440 High mobility group B protein 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 294 361
IPR001606 ARID_dom 63 147
No external refs found!