Solyc08g065420.3.1 (Solyc08g065420.3)


Aliases : Solyc08g065420.3

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM. homeobox gene 1 (ATH1)


Gene families : OG_01_0000167 (Gene family) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc08g065420.3.1
Cluster HCCA cluster: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT1G19700 BEL10, BLH10 BEL1-like homeodomain 10 0.03 Gene family
AT2G27990 BLH8, PNF BEL1-like homeodomain 8 0.04 Gene family
AT4G32980 ATH1 homeobox gene 1 0.02 Gene family
AT5G02030 VAN, BLH9, RPL,... POX (plant homeobox) family protein 0.05 Gene family
Cpa|evm.model.tig00020927.63 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.01 Gene family
GSVIVT01009779001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
GSVIVT01019399001 No alias No description available 0.02 Gene family
GSVIVT01025220001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
GSVIVT01035361001 No alias 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.12 Gene family
LOC_Os02g13310 Os02g0226600 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
LOC_Os06g01934 Os06g0108900 No description available 0.04 Gene family
LOC_Os06g36680 Os06g0562300 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.05 Gene family
Solyc02g089940.3.1 Solyc02g089940.3 No description available 0.03 Gene family
Solyc09g011380.3.1 Solyc09g011380.3 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.04 Gene family
Zm00001d002249 GRMZM2G142700 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d010060 GRMZM2G074645 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d013547 GRMZM2G148098 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d016298 GRMZM2G161435 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d027802 GRMZM2G004641 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.03 Gene family
Zm00001d033379 GRMZM2G163761 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family
Zm00001d038355 GRMZM2G125976 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.1 Gene family
Zm00001d042864 GRMZM2G154641 27.3.22 RNA.regulation of transcription.HB,Homeobox... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 479 518
IPR006563 POX_dom 287 417
No external refs found!