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  5. Azfi_s0024.g020315

Azfi_s0024.g020315 (FMA)


Aliases : FMA

Description : bHLH-type transcription factor & original description: CDS=185-937


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0024.g020315

Target Alias Description ECC score Gene Family Method Actions
Ceric.17G023000.1 FMA, Ceric.17G023000 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.61 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Dac_g12824 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28288 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g087850.3.1 Solyc12g087850 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 121 172
No external refs found!