Azfi_s0022.g015949 (ATKU80, KU80)

Aliases : ATKU80, KU80

Description : component *(KU80) of Ku70-Ku80 helicase complex & original description: CDS=521-2635

Gene families : OG0005465 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005465_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0022.g015949
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00149p00057710	ATKU80, KU80,...	DNA damage response.DNA repair mechanisms.nonhomologous...	0.02	OrthoFinder output from all 47 species
Aev_g01429	ATKU80, KU80	component *(KU80) of Ku70-Ku80 helicase complex &...	0.03	OrthoFinder output from all 47 species
MA_159677g0010	ATKU80, KU80	ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza...	0.03	OrthoFinder output from all 47 species
MA_169473g0010	ATKU80, KU80	ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza...	0.03	OrthoFinder output from all 47 species
Ore_g17280	ATKU80, KU80	component *(KU80) of Ku70-Ku80 helicase complex &...	0.05	OrthoFinder output from all 47 species
Zm00001e006411_P003	ATKU80, KU80,...	component KU80 of Ku70-Ku80 helicase complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014893	Ku_PK_bind	560	675
IPR006164	Ku70/Ku80_beta-barrel_dom	220	424
IPR005161	Ku_N	9	167

External Links

No external refs found!

Azfi_s0022.g015949 (ATKU80, KU80)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation