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  5. Azfi_s0019.g015186

Azfi_s0019.g015186 (MAC3A)


Aliases : MAC3A

Description : E3 ubiquitin protein ligase *(PUB60) & original description: CDS=1-1641


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0019.g015186

Target Alias Description ECC score Gene Family Method Actions
Aop_g50451 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_26066 MAC3A Pre-mRNA-processing factor 19 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0429.g027376 MAC3B E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 413 448
IPR001680 WD40_repeat 499 537
IPR001680 WD40_repeat 281 317
IPR001680 WD40_repeat 326 363
IPR013915 Pre-mRNA_splic_Prp19 105 153
No external refs found!