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  5. Azfi_s0015.g014011

Azfi_s0015.g014011 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : not classified & original description: CDS=34-3882


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0015.g014011
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Gb_31802 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Pp3c16_6070V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c25_15140V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Solyc10g078880.2.1 NRPC2, Solyc10g078880 subunit 2 of Pol III RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 636 663
IPR007645 RNA_pol_Rpb2_3 485 514
IPR007646 RNA_pol_Rpb2_4 698 759
IPR007644 RNA_pol_bsu_protrusion 29 456
IPR007642 RNA_pol_Rpb2_2 225 414
IPR007641 RNA_pol_Rpb2_7 1192 1279
IPR007120 DNA-dir_RNAP_su2_dom 838 1190
IPR007647 RNA_pol_Rpb2_5 783 829
No external refs found!