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  5. Azfi_s0015.g013714

Azfi_s0015.g013714


Description : small subunit of methylthioalkylmalate isomerase & original description: CDS=256-1071


Gene families : OG0004189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0015.g013714

Target Alias Description ECC score Gene Family Method Actions
Adi_g018696 No alias small subunit of methylthioalkylmalate isomerase &... 0.02 OrthoFinder output from all 47 species
Dac_g12347 No alias small subunit of methylthioalkylmalate isomerase &... 0.03 OrthoFinder output from all 47 species
Pp3c1_29090V3.1 Pp3c1_29090 Aconitase/3-isopropylmalate dehydratase protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014282 No alias small subunit of methylthioalkylmalate isomerase &... 0.03 OrthoFinder output from all 47 species
Spa_g12965 No alias small subunit of methylthioalkylmalate isomerase &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009439 cyanate metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000573 AconitaseA/IPMdHydase_ssu_swvl 138 190
No external refs found!