Azfi_s0014.g013637 (emb1138)

Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: CDS=224-2419

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0014.g013637

Target	Alias	Description	ECC score	Gene Family Method
Adi_g054902	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g055951	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g10862	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Cba_g18561	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g09784	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07831	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.02	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750	PRH75	not classified & original description: CDS=177-2189	0.03	OrthoFinder output from all 47 species
Solyc03g007010.4.1	PRH75, Solyc03g007010	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000387	spliceosomal snRNP assembly	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	205	374
IPR001650	Helicase_C	411	519

External Links

No external refs found!