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  5. Azfi_s0011.g012524

Azfi_s0011.g012524


Description : not classified & original description: CDS=1-2658


Gene families : OG0013708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013708_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0011.g012524
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cba_g29163 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G044700.1 Ceric.03G044700 not classified & original description: pacid=50572595... 0.04 OrthoFinder output from all 47 species
Dde_g25254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g62258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45373 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 793 814
IPR002885 Pentatricopeptide_repeat 117 145
IPR002885 Pentatricopeptide_repeat 493 518
IPR002885 Pentatricopeptide_repeat 420 448
IPR002885 Pentatricopeptide_repeat 392 415
IPR002885 Pentatricopeptide_repeat 219 248
IPR002885 Pentatricopeptide_repeat 594 619
IPR002885 Pentatricopeptide_repeat 190 217
IPR002885 Pentatricopeptide_repeat 693 714
IPR002885 Pentatricopeptide_repeat 720 765
IPR002885 Pentatricopeptide_repeat 317 364
IPR046848 E_motif 837 874
No external refs found!