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  5. Ehy_g02854

Ehy_g02854


Description : scaffold nucleoporin of nuclear pore complex *(NUP93) & original description: none


Gene families : OG0006460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006460_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g02854

Target Alias Description ECC score Gene Family Method Actions
AT3G57350 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.02 OrthoFinder output from all 47 species
Aob_g15307 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species
Cba_g02704 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species
Ore_g15388 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species
Ppi_g09694 No alias scaffold nucleoporin of nuclear pore complex *(NUP93) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 250 855
No external refs found!