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  5. Ehy_g02841

Ehy_g02841


Description : scaffold factor *(COILIN) of Cajal body formation & original description: none


Gene families : OG0006961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g02841
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G13030 No alias sphere organelles protein-related 0.05 OrthoFinder output from all 47 species
Adi_g056217 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Aob_g32147 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69481.t1 Aspi01Gene69481 scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Cba_g15718 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020930.21 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g22884 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
LOC_Os12g19040.1 LOC_Os12g19040 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 137.0) 0.03 OrthoFinder output from all 47 species
MA_10430448g0010 No alias Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 85.9) 0.02 OrthoFinder output from all 47 species
Sam_g16616 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Solyc05g013740.3.1 Solyc05g013740 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 162.0) 0.03 OrthoFinder output from all 47 species
Tin_g28987 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!