Solyc08g041890.3.1 (Solyc08g041890.3)


Aliases : Solyc08g041890.3

Description : 29.3.1 protein.targeting.nucleus Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. importin alpha isoform 2 (IMPA-2)


Gene families : OG_01_0000716 (Gene family) Phylogenetic Tree(s): OG0000716_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc08g041890.3.1
Cluster HCCA cluster: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
AT1G02690 IMPA-6 importin alpha isoform 6 0.03 Gene family
Cre04.g215850 No alias 29.3.1 protein.targeting.nucleus Encodes importin alpha... 0.04 Gene family
GSVIVT01031260001 No alias 29.3.1 protein.targeting.nucleus Protein interacts with... 0.05 Gene family
Zm00001d008345 GRMZM2G088231 29.3.1 protein.targeting.nucleus Protein interacts with... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEA InterProScan
MF GO:0061608 nuclear import signal receptor activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000225 Armadillo 316 356
IPR000225 Armadillo 358 397
IPR000225 Armadillo 189 230
IPR000225 Armadillo 148 186
IPR000225 Armadillo 243 271
IPR000225 Armadillo 274 312
IPR000225 Armadillo 402 439
IPR000225 Armadillo 105 145
IPR032413 Arm_3 456 502
IPR002652 Importin-a_IBB 12 94
No external refs found!