Azfi_s0006.g009798 (SNL4)

Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: CDS=1-3924

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0006.g009798
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Adi_g103364	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g52097	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene27809.t1	SNL4, Aspi01Gene27809	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Ceric.02G103800.1	SNL4, Ceric.02G103800	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Ehy_g10035	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Gb_35988	SNL4	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Lfl_g03500	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ore_g28709	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g006540.3.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Zm00001e025644_P001	SNL4, Zm00001e025644	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016972	thiol oxidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	469	560
IPR003822	PAH	142	186
IPR003822	PAH	58	101
IPR003822	PAH	346	390
IPR031693	Sin3_C	1053	1260

External Links

No external refs found!

Azfi_s0006.g009798 (SNL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation