Azfi_s0006.g009737 (CLO, GFA1, MEE5)


Aliases : CLO, GFA1, MEE5

Description : component *(CLO/SNU114/MAC11) of MAC spliceosome-associated complex & original description: CDS=468-3461


Gene families : OG0003030 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0003030_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0006.g009737

Target Alias Description ECC score Gene Family Method Actions
Adi_g103607 CLO, GFA1, MEE5 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g06490 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species
Dde_g20963 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species
LOC_Os06g40600.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.01 OrthoFinder output from all 39 species
Lfl_g07092 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species
Nbi_g03155 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 39 species
Pir_g32848 CLO, GFA1, MEE5 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Pp3c27_6340V3.1 CLO, GFA1, MEE5,... Ribosomal protein S5/Elongation factor G/III/V family protein 0.01 OrthoFinder output from all 39 species
Pp3c6_29320V3.1 CLO, GFA1, MEE5,... Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 OrthoFinder output from all 39 species
Sam_g30419 No alias component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species
Solyc07g007210.3.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.01 OrthoFinder output from all 39 species
Spa_g01974 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species
Tin_g10992 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
InterPro domains Description Start Stop
IPR000640 EFG_V-like 851 939
IPR000795 T_Tr_GTP-bd_dom 151 355
IPR005517 Transl_elong_EFG/EF2_IV 733 848
IPR031950 EFTUD2_N 4 127
IPR004161 EFTu-like_2 517 591
No external refs found!