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  5. Azfi_s0005.g008949

Azfi_s0005.g008949 (PTAC6)


Aliases : PTAC6

Description : cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6) & original description: CDS=140-1324


Gene families : OG0007877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0005.g008949

Target Alias Description ECC score Gene Family Method Actions
Adi_g108903 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.04 OrthoFinder output from all 47 species
Ceric.38G052000.1 PTAC6, Ceric.38G052000 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Dcu_g39158 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
GSVIVT01008807001 PTAC6 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
LOC_Os11g01890.1 PTAC6, LOC_Os11g01890 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Len_g04695 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Nbi_g00889 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Pir_g17712 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!