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  5. Azfi_s0004.g008527

Azfi_s0004.g008527 (ATCFM2, CFM2)


Aliases : ATCFM2, CFM2

Description : not classified & original description: CDS=155-3025


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0004.g008527
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14100.t1 ATCFM2, CFM2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0211.g058121 ATCFM2, CFM2 not classified & original description: CDS=29-3361 0.03 OrthoFinder output from all 47 species
Cba_g16678 ATCFM3A, CFM3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.04 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.05 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os09g19850.1 LOC_Os09g19850 CRM-domain containing factor CFM3,... 0.02 OrthoFinder output from all 47 species
LOC_Os11g37990.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Len_g08834 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011272_P001 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006166 purine ribonucleoside salvage IEP HCCA
BP GO:0006190 inosine salvage IEP HCCA
MF GO:0008252 nucleotidase activity IEP HCCA
MF GO:0008253 5'-nucleotidase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009163 nucleoside biosynthetic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042451 purine nucleoside biosynthetic process IEP HCCA
BP GO:0042455 ribonucleoside biosynthetic process IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043101 purine-containing compound salvage IEP HCCA
BP GO:0043174 nucleoside salvage IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046102 inosine metabolic process IEP HCCA
BP GO:0046103 inosine biosynthetic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0046129 purine ribonucleoside biosynthetic process IEP HCCA
MF GO:0050483 IMP 5'-nucleotidase activity IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 255 337
IPR001890 RNA-binding_CRM 523 579
IPR001890 RNA-binding_CRM 686 772
No external refs found!