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  5. Azfi_s0003.g007891

Azfi_s0003.g007891


Description : component *(SWIB) of SWI-B chromatin-remodeling complexes & original description: CDS=251-739


Gene families : OG0001482 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0003.g007891
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT2G14880 No alias SWIB/MDM2 domain superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G34290 No alias SWIB/MDM2 domain superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g004192 CHC1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12934 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.06 OrthoFinder output from all 47 species
Len_g26992 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.03 OrthoFinder output from all 47 species
Solyc01g107330.4.1 Solyc01g107330 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Spa_g30391 No alias component *(SWIB) of SWI-B chromatin-remodeling... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 169 241
No external refs found!