Aliases : At-SCL30A, SCL30A
Description : not classified & original description: CDS=92-1078
Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Azfi_s0002.g001329 | |
Cluster | HCCA: Cluster_6 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aop_g03123 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g10682 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cre01.g038650 | At-SCL30A, SCL30A | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | OrthoFinder output from all 47 species | |
Cre13.g586916 | At-SCL28, SCL28 | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g18442 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g10747 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0042.g012699 | No alias | not classified & original description: CDS=138-887 | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006528 | asparagine metabolic process | IEP | HCCA |
BP | GO:0006529 | asparagine biosynthetic process | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
BP | GO:0042545 | cell wall modification | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071555 | cell wall organization | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 116 | 157 |
No external refs found! |