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  5. Azfi_s0001.g000519

Azfi_s0001.g000519


Description : E3 ubiquitin ligase *(PPRT) & original description: CDS=161-1471


Gene families : OG0004649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0001.g000519
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Als_g03066 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03007 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR019396 TM_Fragile-X-F-assoc 153 258
IPR019396 TM_Fragile-X-F-assoc 7 60
No external refs found!