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  5. Azfi_s0001.g000245

Azfi_s0001.g000245


Description : not classified & original description: CDS=137-1642


Gene families : OG0001358 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001358_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0001.g000245

Target Alias Description ECC score Gene Family Method Actions
AT5G43870 No alias Plant protein of unknown function (DUF828) with plant... 0.03 OrthoFinder output from all 47 species
Aspi01Gene15909.t1 Aspi01Gene15909 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014535 No alias not classified & original description: CDS=1-1842 0.03 OrthoFinder output from all 47 species
Solyc09g065590.3.1 Solyc09g065590 VAN3-binding protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g04976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012419_P002 Zm00001e012419 VAN3-binding protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR013666 PH_pln 391 495
IPR008546 VAN3-bd-like_auxin_canal 133 358
No external refs found!