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Description : RNA polymerase-IV-positioning factor *(SHH) & original description: CDS=87-896
Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0001.g000126 | |
| Cluster | HCCA: Cluster_41 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G15215 | No alias | BEST Arabidopsis thaliana protein match is:... | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g06860.1 | No alias | RNA polymerase-IV-positioning factor (SHH).... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g00809 | No alias | RNA polymerase-IV-positioning factor *(SHH) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g070160.2.1 | Solyc11g070160 | RNA polymerase-IV-positioning factor (SHH).... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000439 | transcription factor TFIIH core complex | IEP | HCCA |
| CC | GO:0001534 | radial spoke | IEP | HCCA |
| BP | GO:0003341 | cilium movement | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| BP | GO:0006289 | nucleotide-excision repair | IEP | HCCA |
| MF | GO:0010011 | auxin binding | IEP | HCCA |
| BP | GO:0030030 | cell projection organization | IEP | HCCA |
| BP | GO:0030031 | cell projection assembly | IEP | HCCA |
| MF | GO:0042562 | hormone binding | IEP | HCCA |
| BP | GO:0044782 | cilium organization | IEP | HCCA |
| BP | GO:0060271 | cilium assembly | IEP | HCCA |
| BP | GO:0060294 | cilium movement involved in cell motility | IEP | HCCA |
| BP | GO:0070925 | organelle assembly | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| BP | GO:0120031 | plasma membrane bounded cell projection assembly | IEP | HCCA |
| BP | GO:0120036 | plasma membrane bounded cell projection organization | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032001 | SAWADEE_dom | 140 | 267 |
| No external refs found! |