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  5. Ceric.39G043300.1

Ceric.39G043300.1 (PUM7, APUM7, Ceric.39G043300)


Aliases : PUM7, APUM7, Ceric.39G043300

Description : not classified & original description: pacid=50583488 polypeptide=Ceric.39G043300.1.p locus=Ceric.39G043300 ID=Ceric.39G043300.1.v2.1 annot-version=v2.1


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.39G043300.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00178160 PUM7, APUM7,... Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54829.t1 PUM7, APUM7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.02 OrthoFinder output from all 47 species
Len_g13938 PUM7, APUM7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_63194g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Tin_g06123 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 699 726
IPR001313 Pumilio_RNA-bd_rpt 769 802
IPR001313 Pumilio_RNA-bd_rpt 807 824
IPR001313 Pumilio_RNA-bd_rpt 841 875
IPR001313 Pumilio_RNA-bd_rpt 622 656
IPR001313 Pumilio_RNA-bd_rpt 879 912
IPR001313 Pumilio_RNA-bd_rpt 658 689
IPR001313 Pumilio_RNA-bd_rpt 734 766
No external refs found!