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  5. Ehy_g02287

Ehy_g02287


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g02287

Target Alias Description ECC score Gene Family Method Actions
AT1G53460 No alias BEST Arabidopsis thaliana protein match is: Ran BP2/NZF... 0.03 OrthoFinder output from all 47 species
Aev_g20942 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.05 OrthoFinder output from all 47 species
Gb_13912 No alias RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20697 No alias RNA ediTing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004417 hydroxyethylthiazole kinase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 282 306
No external refs found!