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  5. Ceric.38G009700.1

Ceric.38G009700.1 (PSBC, Ceric.38G009700)


Aliases : PSBC, Ceric.38G009700

Description : component *(PsbC/CP43) of PS-II reaction center complex & original description: pacid=50579343 polypeptide=Ceric.38G009700.1.p locus=Ceric.38G009700 ID=Ceric.38G009700.1.v2.1 annot-version=v2.1


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.38G009700.1
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 PSBC,... Photosystem II CP43 reaction center protein OS=Carica papaya 0.06 OrthoFinder output from all 47 species
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.06 OrthoFinder output from all 47 species
ATCG00280 PSBC photosystem II reaction center protein C 0.24 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.28 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.09 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Ceric.38G040900.1 PSBC, Ceric.38G040900 not classified & original description: pacid=50580441... 0.06 OrthoFinder output from all 47 species
Dac_g04293 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.16 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.08 OrthoFinder output from all 47 species
GSVIVT01027074001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_06826 PSBC Photosystem II CP43 reaction center protein OS=Cycas... 0.14 OrthoFinder output from all 47 species
Gb_11943 PSBC Photosystem II CP43 reaction center protein... 0.14 OrthoFinder output from all 47 species
Gb_19153 PSBC Photosystem II CP43 reaction center protein... 0.14 OrthoFinder output from all 47 species
Gb_19166 PSBC Photosystem II CP43 reaction center protein... 0.03 OrthoFinder output from all 47 species
Gb_22672 PSBC Photosystem II CP43 reaction center protein... 0.14 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.33 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.35 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.26 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.16 OrthoFinder output from all 47 species
MA_9155188g0010 PSBC Photosystem II CP43 reaction center protein OS=Cuscuta... 0.03 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Nbi_g01251 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.19 OrthoFinder output from all 47 species
Pnu_g00846 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Ppi_g02376 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.11 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.11 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.11 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.09 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.12 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.27 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.27 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.27 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.09 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc12g038080.1.1 PSBC, Solyc12g038080 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Tin_g01229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.07 OrthoFinder output from all 47 species
Zm00001e042157_P001 PSBC, Zm00001e042157 Photosystem II CP43 reaction center protein OS=Sorghum... 0.08 OrthoFinder output from all 47 species
Zm00001e042269_P001 PSBC, Zm00001e042269 Photosystem II CP43 reaction center protein OS=Sorghum... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 31 469
No external refs found!