Solyc08g007110.3.1 (Solyc08g007110.3)


Aliases : Solyc08g007110.3

Description : 27.1.2 RNA.processing.RNA helicase Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. LOW-LEVEL BETA-AMYLASE 1 (LBA1)


Gene families : OG_01_0004894 (Gene family) Phylogenetic Tree(s): OG0004894_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc08g007110.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.09 Gene family
Cre02.g092500 No alias 27.1.2 RNA.processing.RNA helicase Required for... 0.02 Gene family
GSVIVT01013247001 No alias 27.1.2 RNA.processing.RNA helicase Required for... 0.12 Gene family
LOC_Os07g31340 Os07g0495900 27.1.2 RNA.processing.RNA helicase Required for... 0.14 Gene family
MA_10436671g0010 No alias 27.1.2 RNA.processing.RNA helicase Required for... 0.08 Gene family
MA_355288g0010 No alias 27.1.2 RNA.processing.RNA helicase Required for... 0.05 Gene family
Zm00001d006438 GRMZM2G076730,... 27.1.2 RNA.processing.RNA helicase Required for... 0.13 Gene family
Zm00001d021553 GRMZM2G138230 27.1.2 RNA.processing.RNA helicase Required for... 0.18 Gene family

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA InterProScan
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0004386 helicase activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
CC GO:0005737 cytoplasm IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 555 624
IPR018999 RNA-helicase_UPF1_UPF2-interct 243 354
IPR018999 RNA-helicase_UPF1_UPF2-interct 128 172
No external refs found!