Ehy_g02200 (At-SCL30A, SCL30A)

Aliases : At-SCL30A, SCL30A

Description : RNA splicing factor *(SCL28/30/33) & original description: none

Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g02200

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0104.g044778	SCL30, At-SCL30	not classified & original description: CDS=245-904	0.02	OrthoFinder output from all 47 species
Cba_g52579	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016562001	SCL30, At-SCL30	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
LOC_Os03g24890.1	At-SCL28, SCL28,...	SCL28/30/33 RNA splicing factor	0.03	OrthoFinder output from all 47 species
Pir_g02221	At-SCL30A, SCL30A	RNA splicing factor *(SCL28/30/33) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	37	107

External Links

No external refs found!