Ceric.32G022400.1 (SAR1, ATNUP160,...)


Aliases : SAR1, ATNUP160, NUP160, Ceric.32G022400

Description : scaffold nucleoporin of nuclear pore complex *(NUP160) & original description: pacid=50597846 polypeptide=Ceric.32G022400.1.p locus=Ceric.32G022400 ID=Ceric.32G022400.1.v2.1 annot-version=v2.1


Gene families : OG0004742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004742_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.32G022400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00138020 SAR1, ATNUP160,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AT1G33410 SAR1, ATNUP160, NUP160 SUPPRESSOR OF AUXIN RESISTANCE1 0.09 OrthoFinder output from all 47 species
Adi_g017509 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Aev_g48633 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010410 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000691.37 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g324000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09122 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Ehy_g04055 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01015912001 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
Gb_36285 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Gb_36286 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g04970.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Len_g23832 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
MA_10430989g0010 SAR1, ATNUP160, NUP160 Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10436566g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp8g11350.1 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Msp_g14433 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Ppi_g16275 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.08 OrthoFinder output from all 47 species
Sam_g49513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g102540.3.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Spa_g07635 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Tin_g09156 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Zm00001e013640_P002 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR035192 NUP160 522 710
No external refs found!