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  5. Ceric.31G019000.1

Ceric.31G019000.1 (Ceric.31G019000)


Aliases : Ceric.31G019000

Description : scaffold factor *(COILIN) of Cajal body formation & original description: pacid=50575057 polypeptide=Ceric.31G019000.1.p locus=Ceric.31G019000 ID=Ceric.31G019000.1.v2.1 annot-version=v2.1


Gene families : OG0006961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.31G019000.1

Target Alias Description ECC score Gene Family Method Actions
AT1G13030 No alias sphere organelles protein-related 0.07 OrthoFinder output from all 47 species
Adi_g056217 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Als_g21336 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Aob_g32147 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.03 OrthoFinder output from all 47 species
Aop_g09840 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020930.21 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre13.g592400 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g45248 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
GSVIVT01000557001 No alias Coilin OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os12g19040.1 LOC_Os12g19040 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 137.0) 0.04 OrthoFinder output from all 47 species
Sam_g16616 No alias scaffold factor *(COILIN) of Cajal body formation &... 0.04 OrthoFinder output from all 47 species
Solyc05g013740.3.1 Solyc05g013740 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 162.0) 0.05 OrthoFinder output from all 47 species
Zm00001e040792_P001 Zm00001e040792 Coilin OS=Arabidopsis thaliana (sp|q8rwk8|coil_arath : 220.0) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR031722 Coilin_N 18 183
No external refs found!