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  5. Ceric.30G067400.1

Ceric.30G067400.1 (Ceric.30G067400)


Aliases : Ceric.30G067400

Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex & original description: pacid=50608203 polypeptide=Ceric.30G067400.1.p locus=Ceric.30G067400 ID=Ceric.30G067400.1.v2.1 annot-version=v2.1


Gene families : OG0004943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.30G067400.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260990 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 OrthoFinder output from all 47 species
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g04026 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Dde_g01696 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22740.1 LOC_Os03g22740 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
MA_513089g0010 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.02 OrthoFinder output from all 47 species
Solyc09g083080.4.1 Solyc09g083080 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 394
IPR012974 NOP58/56_N 2 65
No external refs found!