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  5. Ceric.30G057400.1

Ceric.30G057400.1 (Ceric.30G057400)


Aliases : Ceric.30G057400

Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: pacid=50608821 polypeptide=Ceric.30G057400.1.p locus=Ceric.30G057400 ID=Ceric.30G057400.1.v2.1 annot-version=v2.1


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.30G057400.1

Target Alias Description ECC score Gene Family Method Actions
AT1G63210 No alias Transcription elongation factor Spt6 0.03 OrthoFinder output from all 47 species
AT1G65440 GTB1 global transcription factor group B1 0.02 OrthoFinder output from all 47 species
Aev_g43821 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ala_g22952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25347 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Als_g61446 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g17694 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Aob_g20381 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aop_g31491 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Aop_g37398 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.8 GTB1 Chromatin organisation.histone chaperone... 0.01 OrthoFinder output from all 47 species
Dcu_g14255 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Dcu_g19973 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
LOC_Os05g41510.1 GTB1, LOC_Os05g41510 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Len_g19196 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
MA_13648g0020 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 OrthoFinder output from all 47 species
Msp_g42177 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Msp_g43712 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ore_g08934 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Solyc10g081020.2.1 GTB1, Solyc10g081020 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Spa_g16432 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g02913 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR035420 Spt6_SH2 1125 1324
IPR032706 Spt6_HHH 795 897
IPR028231 Spt6_YqgF 639 790
No external refs found!