Solyc07g062840.3.1 (Solyc07g062840.3)


Aliases : Solyc07g062840.3

Description : 33.99 development.unspecified Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2. CUP-SHAPED COTYLEDON 2 (CUC2)


Gene families : OG_01_0000027 (Gene family) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc07g062840.3.1
Cluster HCCA cluster: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT1G54330 ANAC020, NAC020 NAC domain containing protein 20 0.02 Gene family
AT1G76420 ANAC031, NAC368, CUC3 NAC (No Apical Meristem) domain transcriptional... 0.08 Gene family
AT3G15170 ANAC054, ATNAC1, CUC1 NAC (No Apical Meristem) domain transcriptional... 0.05 Gene family
AT3G18400 anac058, NAC058 NAC domain containing protein 58 0.03 Gene family
AT4G17980 anac071, NAC071 NAC domain containing protein 71 0.03 Gene family
AT5G46590 anac096, NAC096 NAC domain containing protein 96 0.03 Gene family
AT5G53950 ATCUC2, ANAC098, CUC2 NAC (No Apical Meristem) domain transcriptional... 0.07 Gene family
GSVIVT01001264001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.03 Gene family
GSVIVT01007982001 No alias 33.99 development.unspecified NAC domain containing... 0.02 Gene family
GSVIVT01008291001 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
GSVIVT01013419001 No alias 33.99 development.unspecified Identified in an enhancer... 0.11 Gene family
GSVIVT01014287001 No alias 33.99 development.unspecified Transcriptional activator... 0.07 Gene family
GSVIVT01016176001 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
GSVIVT01018623001 No alias 33.99 development.unspecified Encodes a NAC-domain... 0.02 Gene family
GSVIVT01027470001 No alias 33.99 development.unspecified NAC transcription... 0.02 Gene family
GSVIVT01029392001 No alias 33.99 development.unspecified NAC domain containing... 0.04 Gene family
GSVIVT01033374001 No alias 33.99 development.unspecified Arabidopsis NAC domain... 0.02 Gene family
LOC_Os06g04090 Os06g0131700 33.99 development.unspecified NAC transcription factor... 0.02 Gene family
LOC_Os06g23650 Os06g0344900 33.99 development.unspecified Transcriptional activator... 0.07 Gene family
LOC_Os08g02300 Os08g0115800 33.99 development.unspecified NAC transcription factor... 0.02 Gene family
LOC_Os08g40030 Os08g0511200 33.99 development.unspecified Identified in an enhancer... 0.07 Gene family
LOC_Os12g03050 Os12g0123800 33.99 development.unspecified Arabidopsis NAC domain... 0.02 Gene family
MA_10430397g0010 No alias 27.3.27 RNA.regulation of transcription.NAC domain... 0.01 Gene family
MA_109677g0010 No alias 33.99 development.unspecified NAC domain containing... 0.02 Gene family
MA_1948g0010 No alias 33.99 development.unspecified NAC family member,... 0.02 Gene family
Solyc06g063430.2.1 Solyc06g063430.2 33.99 development.unspecified NAC domain protein. SMB,... 0.03 Gene family
Solyc06g065410.3.1 Solyc06g065410.3 33.99 development.unspecified Encodes a NAC-domain... 0.04 Gene family
Solyc11g018660.2.1 Solyc11g018660.2 33.99 development.unspecified Encodes a NAC-domain... 0.04 Gene family
Solyc12g017400.2.1 Solyc12g017400.2 33.99 development.unspecified NAC-domain protein.... 0.03 Gene family
Zm00001d002828 GRMZM2G178998 33.99 development.unspecified Encodes a NAC-domain... 0.02 Gene family
Zm00001d013717 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d017396 GRMZM2G315140 33.99 development.unspecified Encodes a NAC-domain... 0.01 Gene family
Zm00001d020982 GRMZM2G386163 33.99 development.unspecified Arabidopsis NAC domain... 0.03 Gene family
Zm00001d021424 No alias 33.99 development.unspecified NAC domain containing... 0.04 Gene family
Zm00001d022517 GRMZM2G181605 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d031463 GRMZM2G430522 33.99 development.unspecified Identified in an enhancer... 0.04 Gene family
Zm00001d033308 No alias 33.99 development.unspecified NAC domain containing... 0.03 Gene family
Zm00001d035266 GRMZM2G393433 33.99 development.unspecified Transcriptional activator... 0.07 Gene family
Zm00001d041791 GRMZM2G139700 33.99 development.unspecified Transcriptional activator... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003441 NAC-dom 17 143
No external refs found!