Solyc07g062660.3.1 (Solyc07g062660.3)


Aliases : Solyc07g062660.3

Description : 27.3.52 RNA.regulation of transcription.Global transcription factor group This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation. global transcription factor group E4 (GTE4)


Gene families : OG_01_0000231 (Gene family) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc07g062660.3.1
Cluster HCCA cluster: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT1G06230 GTE4 global transcription factor group E4 0.07 Gene family
AT5G10550 GTE2 global transcription factor group E2 0.05 Gene family
AT5G14270 BET9, ATBET9 bromodomain and extraterminal domain protein 9 0.05 Gene family
Cre03.g168050 No alias No description available 0.02 Gene family
Cre08.g367300 No alias 27.3.52 RNA.regulation of transcription.Global... 0.03 Gene family
GSVIVT01008492001 No alias 35.2 not assigned.unknown Encodes NPX1 (Nuclear Protein... 0.07 Gene family
GSVIVT01014233001 No alias 27.3.52 RNA.regulation of transcription.Global... 0.05 Gene family
GSVIVT01020670001 No alias 27.3.52 RNA.regulation of transcription.Global... 0.08 Gene family
GSVIVT01034328001 No alias No description available 0.02 Gene family
GSVIVT01038522001 No alias 27.3.52 RNA.regulation of transcription.Global... 0.03 Gene family
LOC_Os01g11580 Os01g0214300 27.3.52 RNA.regulation of transcription.Global... 0.11 Gene family
LOC_Os02g15220 Os02g0250300 27.3.52 RNA.regulation of transcription.Global... 0.05 Gene family
LOC_Os07g32420 Os07g0507700 27.3.52 RNA.regulation of transcription.Global... 0.04 Gene family
MA_10435152g0020 No alias 35.2 not assigned.unknown Encodes NPX1 (Nuclear Protein... 0.03 Gene family
MA_18020g0010 No alias 27.3.52 RNA.regulation of transcription.Global... 0.07 Gene family
MA_87057g0010 No alias 27.3.52 RNA.regulation of transcription.Global... 0.04 Gene family
Smo28941 PACid_15411762 No description available 0.02 Gene family
Zm00001d004790 GRMZM2G169688 27.3.52 RNA.regulation of transcription.Global... 0.05 Gene family
Zm00001d008922 GRMZM2G167718 27.3.52 RNA.regulation of transcription.Global... 0.02 Gene family
Zm00001d016131 GRMZM2G010075 27.3.52 RNA.regulation of transcription.Global... 0.03 Gene family
Zm00001d049638 GRMZM2G351382 27.3.52 RNA.regulation of transcription.Global... 0.03 Gene family
Zm00001d053022 GRMZM2G317652 27.3.52 RNA.regulation of transcription.Global... 0.09 Gene family
Zm00001d053427 GRMZM2G004741 27.3.52 RNA.regulation of transcription.Global... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001487 Bromodomain 396 480
IPR027353 NET_dom 586 647
No external refs found!