Solyc07g062190.3.1 (Solyc07g062190.3)

Aliases : Solyc07g062190.3

Description : 29.2.1.1.1.2.13 protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L13 embryo defective 1473 (emb1473)

Gene families : OG_01_0006747 (Gene family) Phylogenetic Tree(s): OG0006747_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc07g062190.3.1
Cluster	HCCA cluster: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.15	Gene family
Cpa\|evm.model.tig00020912.24	No alias	29.2.1.1.1.2.13 protein.synthesis.ribosomal...	0.04	Gene family
Cre06.g264350	No alias	29.2.1.1.1.2.13 protein.synthesis.ribosomal...	0.17	Gene family
GSVIVT01014101001	No alias	29.2.1.1.1.2.13 protein.synthesis.ribosomal...	0.13	Gene family
LOC_Os01g54540	Os01g0749200	29.2.1.1.1.2.13 protein.synthesis.ribosomal...	0.06	Gene family
MA_10433400g0010	No alias	29.2.1.1.1.2.13 protein.synthesis.ribosomal...	0.05	Gene family
Smo7665	PACid_15403742	No description available	0.07	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan
BP	GO:0006412	translation	IEA	InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	97	219

External Links

No external refs found!

Solyc07g062190.3.1 (Solyc07g062190.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation