Aliases : NUP96, PRE, SAR3, MOS3, Ceric.29G008200
Description : scaffold nucleoporin of nuclear pore complex & original description: pacid=50625933 polypeptide=Ceric.29G008200.1.p locus=Ceric.29G008200 ID=Ceric.29G008200.1.v2.1 annot-version=v2.1
Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g086878 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aev_g24504 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g12918 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Als_g02615 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g06496 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g08739 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g09959 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cre02.g086887 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g08969 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g22620 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.07 | OrthoFinder output from all 47 species | |
Gb_29033 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g28690.2 | LOC_Os01g28690 | NUP98 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g07580.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
Len_g13759 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g06213 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.06 | OrthoFinder output from all 47 species | |
MA_10434126g0020 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g01454 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g15205 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g22018 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g13028 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g18772 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g35134 | No alias | scaffold nucleoporin of nuclear pore complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g117120.4.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e038897_P001 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0007062 | sister chromatid cohesion | IEP | HCCA |
BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022402 | cell cycle process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |