Ceric.29G004400.1 (Ceric.29G004400)

Aliases : Ceric.29G004400

Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: pacid=50624362 polypeptide=Ceric.29G004400.1.p locus=Ceric.29G004400 ID=Ceric.29G004400.1.v2.1 annot-version=v2.1

Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.29G004400.1
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
ATCG00800	No alias	structural constituent of ribosome	0.07	OrthoFinder output from all 47 species
Aev_g14422	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.05G052300.1	Ceric.05G052300	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.1Z164000.1	Ceric.1Z164000	not classified & original description: pacid=50596956...	0.04	OrthoFinder output from all 47 species
Dcu_g13090	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os04g16824.1	LOC_Os04g16824	component psRPS3 of small ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
LOC_Os09g24416.1	LOC_Os09g24416	component psRPS3 of small ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Lfl_g28864	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ore_g10343	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pir_g00314	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	117	199

External Links

No external refs found!

Ceric.29G004400.1 (Ceric.29G004400)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation