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  5. Ceric.28G053600.1

Ceric.28G053600.1 (Ceric.28G053600)


Aliases : Ceric.28G053600

Description : ndhA-specific mRNA splicing factor & original description: pacid=50570414 polypeptide=Ceric.28G053600.1.p locus=Ceric.28G053600 ID=Ceric.28G053600.1.v2.1 annot-version=v2.1


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.28G053600.1

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g07360.1 LOC_Os02g07360 ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 OrthoFinder output from all 47 species
Nbi_g25683 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05985 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20465 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g17511 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25675 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047746 chlorophyllase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 195
IPR002885 Pentatricopeptide_repeat 12 40
IPR002885 Pentatricopeptide_repeat 43 90
IPR002885 Pentatricopeptide_repeat 218 266
No external refs found!