1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.28G030000.1

Ceric.28G030000.1 (Ceric.28G030000)


Aliases : Ceric.28G030000

Description : not classified & original description: pacid=50570416 polypeptide=Ceric.28G030000.1.p locus=Ceric.28G030000 ID=Ceric.28G030000.1.v2.1 annot-version=v2.1


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.28G030000.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Adi_g104494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g69062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g52200.1 LOC_Os04g52200 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g12180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp8g17720.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g43027 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021459 No alias not classified & original description: CDS=203-2689 0.03 OrthoFinder output from all 47 species
Sam_g14275 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo182522 No alias Polyadenylate-binding protein 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g081940.3.1 Solyc02g081940 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 72
IPR000504 RRM_dom 638 717
IPR000504 RRM_dom 744 812
IPR000504 RRM_dom 319 389
IPR000504 RRM_dom 516 572
No external refs found!