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  5. Ehy_g01414

Ehy_g01414 (AtHPR1, AtTHO1, THO1, HPR1)


Aliases : AtHPR1, AtTHO1, THO1, HPR1

Description : component *(THOC1/HPR1) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0004861 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0004861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g01414

Target Alias Description ECC score Gene Family Method Actions
Aev_g07899 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.01 OrthoFinder output from all 39 species
Ceric.1Z091900.1 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.01 OrthoFinder output from all 39 species
Ore_g03945 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.01 OrthoFinder output from all 39 species
Pp3c2_4660V3.1 AtHPR1, AtTHO1,... nuclear matrix protein-related 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 111 541
No external refs found!