1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.25G049900.1

Ceric.25G049900.1 (ATHDA19, HDA1, HD1,...)


Aliases : ATHDA19, HDA1, HD1, ATHD1, HDA19, RPD3A, Ceric.25G049900

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & original description: pacid=50594110 polypeptide=Ceric.25G049900.1.p locus=Ceric.25G049900 ID=Ceric.25G049900.1.v2.1 annot-version=v2.1


Gene families : OG0000827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000827_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.25G049900.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00130970 ATHDA19, HDA1,... Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Aop_g01789 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Cba_g36476 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000113.44 ATHDA19, HDA1,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000215.121 ATHDA19, HDA1,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Dcu_g01364 HDA09, HDA9 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
GSVIVT01007671001 HDA6, RTS1,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
GSVIVT01030885001 ATHDA19, HDA1,... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
LOC_Os04g33480.1 HDA09, HDA9,... class-I histone deacetylase 0.02 OrthoFinder output from all 47 species
MA_9079g0010 HDA09, HDA9 Histone deacetylase 9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g29190.1 ATHDA19, HDA1,... class-I histone deacetylase. deacetylase component HDA19... 0.04 OrthoFinder output from all 47 species
Pir_g05454 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ppi_g13297 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Sam_g17216 No alias EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Tin_g03412 ATHDA19, HDA1,... EC_3.5 hydrolase acTing on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Zm00001e008229_P001 HDA09, HDA9,... class-I histone deacetylase. component HDA9 of HDA9-PWR... 0.03 OrthoFinder output from all 47 species
Zm00001e024957_P002 ATHDA19, HDA1,... class-I histone deacetylase. deacetylase component HDA19... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 36 324
No external refs found!