1. Home
  2. Species
  3. Ceratopteris richardii
  4. Sequence
  5. Ceric.22G050400.1

Ceric.22G050400.1 (RPN10, MCB1, ATMCB1,...)


Aliases : RPN10, MCB1, ATMCB1, MBP1, Ceric.22G050400

Description : regulatory component *(RPN10) of 26S proteasome & original description: pacid=50614735 polypeptide=Ceric.22G050400.1.p locus=Ceric.22G050400 ID=Ceric.22G050400.1.v2.1 annot-version=v2.1


Gene families : OG0003945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003945_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.22G050400.1

Target Alias Description ECC score Gene Family Method Actions
AT4G38630 RPN10, MCB1, ATMCB1, MBP1 regulatory particle non-ATPase 10 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000829.9 RPN10, MCB1, ATMCB1, MBP1 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Cre16.g663500 RPN10, MCB1, ATMCB1, MBP1 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
Dac_g21122 RPN10, MCB1, ATMCB1, MBP1 regulatory component *(RPN10) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018756001 RPN10, MCB1, ATMCB1, MBP1 Protein degradation.26S proteasome.regulatory... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13970.1 RPN10, MCB1,... regulatory component RPN10 of 26S proteasome 0.04 OrthoFinder output from all 47 species
MA_10428946g0010 RPN10, MCB1, ATMCB1, MBP1 regulatory component RPN10 of 26S proteasome 0.03 OrthoFinder output from all 47 species
MA_10429598g0010 RPN10, MCB1, ATMCB1, MBP1 regulatory component RPN10 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Sam_g37679 No alias regulatory component *(RPN10) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e001011_P001 RPN10, MCB1,... regulatory component RPN10 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e038598_P003 RPN10, MCB1,... regulatory component RPN10 of 26S proteasome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002035 VWF_A 6 115
IPR003903 UIM_dom 230 243
IPR003903 UIM_dom 328 343
IPR003903 UIM_dom 296 311
No external refs found!