Ceric.21G086600.1 (PMS1, Ceric.21G086600)

Aliases : PMS1, Ceric.21G086600

Description : component *(PMS1) of MLH1-PMS1 heterodimer & original description: pacid=50604362 polypeptide=Ceric.21G086600.1.p locus=Ceric.21G086600 ID=Ceric.21G086600.1.v2.1 annot-version=v2.1

Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ceric.21G086600.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G02460	PMS1	DNA mismatch repair protein, putative	0.03	OrthoFinder output from all 47 species
Adi_g058158	PMS1	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.93	PMS1	DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre04.g227000	PMS1	DNA damage response.DNA repair mechanisms.mismatch...	0.02	OrthoFinder output from all 47 species
Ehy_g15907	PMS1	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01027985001	PMS1	DNA damage response.DNA repair mechanisms.mismatch...	0.05	OrthoFinder output from all 47 species
LOC_Os02g37920.1	PMS1, LOC_Os02g37920	component PMS1 of MLH1-PMS1 heterodimer	0.03	OrthoFinder output from all 47 species
Sam_g14037	No alias	component *(PMS1) of MLH1-PMS1 heterodimer & original...	0.02	OrthoFinder output from all 47 species
Zm00001e022851_P002	PMS1, Zm00001e022851	component PMS1 of MLH1-PMS1 heterodimer	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014790	MutL_C	745	863
IPR013507	DNA_mismatch_S5_2-like	221	339

External Links

No external refs found!

Ceric.21G086600.1 (PMS1, Ceric.21G086600)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation