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  5. Ceric.21G036500.1

Ceric.21G036500.1 (PRHA, Ceric.21G036500)


Aliases : PRHA, Ceric.21G036500

Description : PHD-type transcription factor & original description: pacid=50604153 polypeptide=Ceric.21G036500.1.p locus=Ceric.21G036500 ID=Ceric.21G036500.1.v2.1 annot-version=v2.1


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.21G036500.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g13053 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09843 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g27981 PRHA PHD-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e019808_P001 HAT3.1, Zm00001e019808 transcription factor (PHD) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 437 485
IPR019787 Znf_PHD-finger 167 221
No external refs found!