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  5. Ceric.21G035200.1

Ceric.21G035200.1 (At-SCL30A, SCL30A,...)


Aliases : At-SCL30A, SCL30A, Ceric.21G035200

Description : RNA splicing factor *(SCL28/30/33) & original description: pacid=50604080 polypeptide=Ceric.21G035200.1.p locus=Ceric.21G035200 ID=Ceric.21G035200.1.v2.1 annot-version=v2.1


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.21G035200.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g12283 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.16 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Len_g18479 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
MA_122608g0010 At-SCL28, SCL28 SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp4g01880.1 At-SCL30A, SCL30A SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Ore_g06380 SR33, At-SCL33,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09848 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29764 At-SCL30A, SCL30A EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Zm00001e020950_P002 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 106
No external refs found!