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  5. Ceric.21G031200.1

Ceric.21G031200.1 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22, Ceric.21G031200

Description : Qa-type SYP2-group component of SNARE membrane fusion complex & original description: pacid=50603044 polypeptide=Ceric.21G031200.1.p locus=Ceric.21G031200 ID=Ceric.21G031200.1.v2.1 annot-version=v2.1


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ceric.21G031200.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g014633 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
MA_10434573g0010 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Mp8g15260.1 VAM3, ATVAM3,... SYP2-group Qa-type SNARE component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 212 263
IPR006011 Syntaxin_N 27 126
No external refs found!